Cybertaxonomist

Entomology Department, Natural History Museum, Cromwell Road, London, SW7 5BD, U.K.

E-mail: vince@vsmith.info (preferred) or v.smith@nhm.ac.uk (official), iChat Video Conferencing: vsmithuk@mac.com (by invitation) Tel: +44 (0) 207 942 5127, Fax: +44 (0) 207 942 5661, Skype: vsmithuk


I am a research scientist at the Natural History Museum, London. My official title is 'cybertaxonomist,' which means I apply computer technology and the web to the study of biodiversity. When I am not doing this, I work on the evolution of parasitic lice (Insecta: Phthiraptera). You can track my research interests and activities through my blog, publications, presentations, reading list, calendar, and my twitter feed.

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EDIT and the Scratchpads - looking back at 2008, part 1

EDIT (the European Distributed Institute of Taxonomy) kicked off 2008 with weeklong meeting in Carvoeiro, Portugal (21 – 25 January 2008) that included a Symposium on Future Trends of Taxonomy, and an EDIT General Meeting to discuss the work and future direction of the EDIT programme of work. The future trends symposium produced a really useful report into Taxonomy in Europe in the 21st century, which is well worth reading. It also paints a dramatically different picture of taxonomy, compared with that espoused by Wheeler and some of his colleagues in his 2008 book on "The New Taxonomy" (see my recent review of this in Systematic Biology).

Bad Blog

2008 was a pretty extraordinary year for me and some of the projects I have been working on. However, I have been very bad at documenting these events. Most of the time I can't even manage 140 characters in a Twitter post, let alone a proper blog post, despite the fact that I can now blog and Twitter away from my iPhone. In recompense I am going to make a few retrospective blog posts looking back at some of the major events that affected my work and me in 2008. This is partly to tell others about them, but is more for the self indulgent reason that I should keep a better record of what I have done, less I forget! Hopefully, this will help me keep one of my New Years resolutions - to become a better blogger.

Electronic Publication, ZooBank and the ICZN

To much outcry, the International Commission on Zoological Nomenclature (ICZN) have announced a one-year consultation period on an amendment of the Zoological Code that would permit the electronic publication of new taxon names (i.e. species descriptions) and nomenclatural acts. Unfortunately few people appear to have read the details before commenting. As it stands, electronic publication is only allowed if physical copies are also deposited in 5 named libraries. The new proposal would remove this library requirement, subject to finding a mechanism that assures enduring access to the information contained within the original article. It is this proviso that most people seem not to have noticed.

Chicago Code Sprint

Several people have asked me to say a few words about the code sprint that took place at Chicago Field Museum (8-11 Sept. 08). This event was to address some of the underlying barriers in the Drupal Content Management System (CMS), that would hinder our use of Drupal for the Encyclopedia of Life's "Life Desk" project, and that we have been trying to grapple with at the NHM in the Scratchpad project. The goal was to engage the Drupal developers community with a few tech savvy biologists, and come up with solutions that would benefit both Drupal and the biological community. The meeting was supported by BioSynC, the Biodiversity Synthesis Center, part of the EoL group based at The Chicago Field Museum. BioSynC provided the logistical support, and were spectacular hosts looking after our every whim. The meeting was run by David Shorthouse, who also did the initial planning. In total there were about 15 participants, mainly independent developers, several EOL informaticians, and a few biologists (myself included).

Blogging from my iPhone

image159389238.jpgFor perhaps obvious reasons this will not be a long post. Suffice to say, I have found a neat iPhone application (iBlogger) that allows me to blog from my iPhone. I now have one less reason not to blog more. Unfortunately my new iPhone gives me several hundred more distractions to stop me blogging. Still, it's a nice to have the option of blogging from my pocket!

Social NotWorking

Last night (Wednesday Sept 25, 08) I attended a Talk Science event at the British Library and took part in a discussion on social networking and Web 2.0 tools in science. Timo Hannay (Web Publishing manager at Nature) gave a great keynote talk ("Scientific Researchers and Web 2.0: Social 'NotWorking'?), which was following by a discussion amongst the 100+ participants, both physical and virtual thanks to Second Life.

Darwin Centre 2

I recently had an opportunity to tour around the new Darwin Centre 2 (DC2) building at the Natural History Museum, London. The building's construction phase is almost over, and it is now about to start being fitted out for public and staff access. DC2 will house most of the NHM’s 30 million+ insect and plant specimens in a 65-metre-long, eight-storey-high cocoon, and provide state of the art labs and office space from most members of the NHM's Entomology and Botany department. The cocoon sits in a glass atrium with workspaces at either end linking the Waterhouse building with the first phase of the Darwin Centre (DC1). The latter houses the NHM's spirit preserved material and the NHM's Zoology department.

Ebbe Nielsen Prize

Ebbe Nielson (1950-2001) was the director of the Australian National Insect Collection at CSIRO, and a leader in what was at the time, the emerging discipline of biodiversity informatics. In recognition of Ebbe Nielson's seminal role in the field of Biodiversity Informatics, the Global Biodiversity Information Facility (GBIF) in 2002 instigated the Ebbe Nielson prize. This award is given annually to "a promising researcher who is combining biosystematics and biological diversity informatics research that supports the objectives of GBIF in an exciting and novel way." For 2008, I was lucky enough to win the award! Needless to say am absolutely delighted. What follows is a gushing thank you to those who have helped contribute to me winning this prize! For those sensitive to such sentimentalism, look away now!

Update!

The past three months (June-August 08) have been extremely busy with conferences, travel and grant applications. Consequently I have been very slack with my recent blogging. In an effort to make recompense, here is a brief update on what I have been up to, and what is coming up. Over the next few days I'll try to expand on a few of these:

Happy 150th Birthday Natural Selection!

Today (July 1st 2008) marks an important anniversary – the 150th birthday of the first public announcement on natural selection. On July 1st 1858 Charles Lyell and Joseph Hooker read out an essay by Alfred Russell Wallace and two unpublished excerpts from Charles Darwin’s writings at meeting of the Linnean Society of London. One month later these documents were published together in the Society's journal. To mark this seminal event in the history of biology, my friend and colleague George Beccaloni has written an essay that outlines the background to this discovery and some of the controversy that followed. The definitive version of this essay is available from the Wallace Fund website, but George has allowed me to post a copy here.

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